PDP increases productivity and efficiency of proteomics laboratories and services by integrating and automating proteomics workflows with advanced bioinformatics and data visualization tools, including the advanced Phenyx. The end-to-end capability gives research laboratories the ability to offer services such as protein identification, sequencing and weight determination of peptides and proteins. PDP also comes with optional modules so that laboratories can do charging as according to services rendered.

1. Web enabled
2. Allows user-friendly job submission, visualization and validation of protein and peptide identification
3. Manages conflicting matches
4. Enables comfortable comparison of multiple MS/MS runs
5. Extensive use of annotations (taxonomy, varsplices, structural annotation, PTM, variants...)
6. Rapid data submission and data retrieval
7. Simplify data validation via interactive peptide match table
8. Compatibility with several formats (mgf, pkl, dta, btdx, PSI standards - ~mzData & mzIdent, mzXML – and more)

PDP automate the data collection, data management and data analysis processes. It is web-enabled by KOOPortal to facilitate distributed storage and tracking of protein samples. A hybrid workflow-agent engine KOOPlatform is embedded to collect, cleanse and store images and data from gel readers, MS equipment, etc.

• Sample Tracking
• Samples are tracked by barcode system

• Gel Image Handling
• Images are persistently stored in databases
• Provide read-only access upon uploaded to ensure data consistency

• Tissue Spots Tracking
• Spots coordinates are persistently stored
• Versioning of tissue/spot images
• Integrate with 3rd party software like PDQuest

• Tissue Spots Mapping
• User-centric friendly GUI to map spots to plates
• Automatic or manual mapping of spot coordinates via easy interface

• Plates Mapping
• 1-to-1 mapping automatically established and tracked while transferring from a 96 well plate to a 100 well plate

• MS Data Analysis
• Phenyx is integrated applied to identify and characterize proteins and peptides from MS data
• MS/MS and Peptide